\section{NFtest\_\-tlbr Namespace Reference}
\label{namespaceNFtest__tlbr}\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}}


\subsection{Detailed Description}
Tests for running the TLBR system. 

\begin{Desc}
\item[Author:]Michael Sneddon \end{Desc}




\subsection*{Functions}
\begin{CompactItemize}
\item 
void {\bf run} (map$<$ string, string $>$ \&argMap)
\item 
void {\bf runSystem} (int n\_\-L, int n\_\-R, double cTot, double beta, double koff, string outputFileName, double simTime, double dt, bool outputObservables, bool outputAvg, bool outputFinalDist)
\item 
{\bf MoleculeType} $\ast$ {\bf createL} ({\bf System} $\ast$s, int count)
\item 
{\bf MoleculeType} $\ast$ {\bf createR} ({\bf System} $\ast$s, int count)
\item 
void {\bf createFreeBindingRxns} ({\bf System} $\ast$s, {\bf MoleculeType} $\ast$L, {\bf MoleculeType} $\ast$R, double rate)
\item 
void {\bf createUnbindingRxns} ({\bf System} $\ast$s, {\bf MoleculeType} $\ast$R, double rate)
\item 
void {\bf createCrossLinkingRxns} ({\bf System} $\ast$s, {\bf MoleculeType} $\ast$L, {\bf MoleculeType} $\ast$R, double rate)
\end{CompactItemize}


\subsection{Function Documentation}
\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!createCrossLinkingRxns@{createCrossLinkingRxns}}
\index{createCrossLinkingRxns@{createCrossLinkingRxns}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}void NFtest\_\-tlbr::createCrossLinkingRxns ({\bf System} $\ast$ {\em s}, {\bf MoleculeType} $\ast$ {\em L}, {\bf MoleculeType} $\ast$ {\em R}, double {\em rate})}\label{namespaceNFtest__tlbr_e44e76d8752423f5408cc757df3a916c}


\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!createFreeBindingRxns@{createFreeBindingRxns}}
\index{createFreeBindingRxns@{createFreeBindingRxns}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}void NFtest\_\-tlbr::createFreeBindingRxns ({\bf System} $\ast$ {\em s}, {\bf MoleculeType} $\ast$ {\em L}, {\bf MoleculeType} $\ast$ {\em R}, double {\em rate})}\label{namespaceNFtest__tlbr_59f11b34acb45bf5e498c5072a39b3c2}


\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!createL@{createL}}
\index{createL@{createL}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}{\bf MoleculeType} $\ast$ NFtest\_\-tlbr::createL ({\bf System} $\ast$ {\em s}, int {\em count})}\label{namespaceNFtest__tlbr_add22a89849f4de69e5d1ea7dab83815}


\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!createR@{createR}}
\index{createR@{createR}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}{\bf MoleculeType} $\ast$ NFtest\_\-tlbr::createR ({\bf System} $\ast$ {\em s}, int {\em count})}\label{namespaceNFtest__tlbr_eacb973707025050daf6e34d522f443d}


\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!createUnbindingRxns@{createUnbindingRxns}}
\index{createUnbindingRxns@{createUnbindingRxns}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}void NFtest\_\-tlbr::createUnbindingRxns ({\bf System} $\ast$ {\em s}, {\bf MoleculeType} $\ast$ {\em R}, double {\em rate})}\label{namespaceNFtest__tlbr_c0ce00086175e31ba2e50007ff4d3549}


\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!run@{run}}
\index{run@{run}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}void NFtest\_\-tlbr::run (map$<$ string, string $>$ \& {\em argMap})}\label{namespaceNFtest__tlbr_02fe303e15540fbfb6dd165e8a4e0c4d}


\index{NFtest\_\-tlbr@{NFtest\_\-tlbr}!runSystem@{runSystem}}
\index{runSystem@{runSystem}!NFtest_tlbr@{NFtest\_\-tlbr}}
\subsubsection{\setlength{\rightskip}{0pt plus 5cm}void NFtest\_\-tlbr::runSystem (int {\em n\_\-L}, int {\em n\_\-R}, double {\em cTot}, double {\em beta}, double {\em koff}, string {\em outputFileName}, double {\em simTime}, double {\em dt}, bool {\em outputObservables}, bool {\em outputAvg}, bool {\em outputFinalDist})}\label{namespaceNFtest__tlbr_492622afdde6500cd6ce214b3282117a}


